Slide Deck: Slide Deck: Hands-on: Hands-on: An Introduction to Genome Assembly / Assembly
Should I consider contigs.fa or scaffolds.fa from SPAdes output for downstream analyses?
4. Genome assembly
BIRCH Tutorial - Assembly of contigs and scaffolds
11_Genome assembly 2 – BCH709 Introduction to Bioinformatics
How to generate a complete genome with hybrid assembly - The Sequencing Center
BIRCH Tutorial - Assembly of contigs and scaffolds
Scaffolding (bioinformatics) - Wikipedia
BIRCH Tutorial - Assembly of contigs and scaffolds
SPAdes
Team III Genome Assembly Group - Compgenomics 2020
Using SPAdes
A workflow for producing hybrid assemblies. Top: SPAdes directly... | Download Scientific Diagram
Metagenome Assembly – Data Processing and Visualization for Metagenomics
What is de novo assembly? - The Sequencing Center
SPAdes – Center for Algorithmic Biotechnology
Modern technologies and algorithms for scaffolding assembled genomes | PLOS Computational Biology
Metagenome Assembly Workflow (v1.0.1) — NMDC Workflows 0.2a documentation
de novo assembly of Illumina reads using Spades (Galaxy) - Bioinformatics Documentation
Genome assembly with Spades - ABRPI-Training
Utah State University Bioinformatics Facility
Completing bacterial genome assemblies: strategy and performance comparisons | Scientific Reports
gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output | PLOS ONE
